Nā hale waihona puke i kākau ʻia ma Nextflow

rnaseq

RNA sequencing analysis pipeline me ka hoʻohana ʻana i STAR, RSEM, HISAT2 a i ʻole Salmon me nā helu gene/isoform a me ka mana o ka maikaʻi.
  • 646
  • MIT

patterns

ʻO kahi hōʻiliʻili curated o nā kumu hoʻokō Nextflow (e nextflow-io).
  • 281
  • MIT

sarek

ʻO ka pipeline no ka ʻike ʻana i ka germline a i ʻole nā ​​ʻano ʻano somatic (pre-processing, ʻano kelepona ʻē aʻe a me ka hōʻike ʻana) mai WGS / hoʻonohonoho ʻia.
  • 256
  • MIT

chipseq

ʻO ChIP-seq peak-call, QC a me nā paipu hoʻokaʻawale ʻokoʻa.
  • 149
  • MIT

atacseq

ATAC-seq peak-call a me QC analysis pipeline.
  • 142
  • MIT

mag

ʻO ka hui ʻana a me ka binning o metagenomes.
  • 134
  • MIT

eager

ʻO kahi paipu hoʻoheheʻe DNA kahiko i hiki ke hana hou ʻia.
  • 96
  • MIT

configs

Hoʻohana ʻia nā faila config e wehewehe i nā ʻāpana kikoʻī no ka helu ʻana i nā kaiapuni ma nā ʻoihana like ʻole (e nf-core).
  • 71
  • MIT

rnaseq-nf

ʻO kahi hōʻoia o ka manaʻo o ka pipeline RNAseq.
  • 53
  • Mozilla Public License 2.0

rare-disease-wf

(WIP) hoʻomaʻamaʻa maikaʻi loa no ka maʻi laha.
  • 51
  • MIT

hlatyping

ʻO ka paʻi pololei ʻana o ka HLA mai ka ʻikepili kaʻina o ka hanauna e hiki mai ana.
  • 45
  • MIT

rnatoy

ʻO kahi hōʻoia o ka manaʻo RNA-Seq pipeline me Nextflow.
  • 28

GATK

ʻO Germline Variant Calling Nextflow Pipeline Ma muli o nā hana maikaʻi loa o GATK4.
  • 11